UHURA 28e

Summary
Added Tadashi's update to getGuidsFromJobPars() to handle the compact form of input files for prun as required by the Oracle migration.
Removed the 2008/2009 sub dirs for BNL.

Version info
Renamed TimedCommand to timed_command as requested by Charles (timed_command, plus all occurances)
Wensheng added 2008 to BNL dir paths in SiteMover (changed later to 2009, and then finally removed again..)
Added Tadashi's update to getGuidsFromJobPars() to handle the compact form of input files
for prun as required by the Oracle migration (RunJobUtilities)
Added file size and checksum tests in put/get (LocalSiteMover)